Xanthomonas arboricola
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas arboricola
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas campestris
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas campestris
NCBI Strain Identifiers CFSAN033084
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001013475.1)
Genome Characteristics
CheckM Completeness 99.28%
CheckM Contamination 0.44%
CheckM Strain Heterogeneity 100.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 210
N50 Contigs 45,363 bp
Longest Contig 174,280 bp
Scaffold Count 210
N50 Scaffolds 45,363 bp
Longest Scaffold 174,280 bp
Genome Size 5,138,566 bp
Protein Count 4,357
Coding Density 85.90%
GC Percentage 65.50%
Ambiguous Bases N/A
GTDB representative GCA_001013475.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CFSAN033084
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03897576
Country Chile: Region del Bio Bio
Date 2015-08-11
Genbank Assembly Accession GCA_001264435.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Walnut blight lesion
Latitude Longitude None
Molecule Count N/A
CDS Count 4,421
Refseq Category na
Seq Rel Date 2015/08/11
Spanned Gaps 0
Species Taxid 339
SSU Count 1
Submitter FDA
Taxid 339
Total Gap Length 0
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LHBR00000000.1