Xanthomonas arboricola
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas arboricola
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas campestris
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas campestris
NCBI Strain Identifiers CFSAN033082
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001013475.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.72%
CheckM Strain Heterogeneity 50.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 232
N50 Contigs 43,232 bp
Longest Contig 160,495 bp
Scaffold Count 232
N50 Scaffolds 43,232 bp
Longest Scaffold 160,495 bp
Genome Size 5,184,404 bp
Protein Count 4,444
Coding Density 86.10%
GC Percentage 65.46%
Ambiguous Bases N/A
GTDB representative GCA_001013475.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CFSAN033082
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03897574
Country Chile
Date 2015-08-11
Genbank Assembly Accession GCA_001264355.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Walnut blight lesion
Latitude Longitude None
Molecule Count N/A
CDS Count 4,467
Refseq Category na
Seq Rel Date 2015/08/11
Spanned Gaps 0
Species Taxid 339
SSU Count 1
Submitter FDA
Taxid 339
Total Gap Length 0
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LHBP00000000.1