Bifidobacterium breve
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium breve
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium breve
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium breve; x__Bifidobacterium breve MCC 1114
NCBI Strain Identifiers MCC 1114
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001025175.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 33
N50 Contigs 176,662 bp
Longest Contig 475,852 bp
Scaffold Count 33
N50 Scaffolds 176,662 bp
Longest Scaffold 475,852 bp
Genome Size 2,487,280 bp
Protein Count 2,173
Coding Density 86.89%
GC Percentage 58.96%
Ambiguous Bases 38
GTDB representative GCA_001025175.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM126385v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03978798
Country Japan
Date 2015-8-11
Genbank Assembly Accession GCA_001263855.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source infant feces
Latitude Longitude None
Molecule Count N/A
CDS Count 2,174
Refseq Category na
Seq Rel Date 2015/08/11
Spanned Gaps 0
Species Taxid 1685
SSU Count 2
Submitter Food Science and Technology Institute, Morinaga Milk Industry Co., Ltd
Taxid 1365964
Total Gap Length 0
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVQC00000000.1