Clostridioides difficile
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
NCBI Strain Identifiers RU-17
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.4%
CheckM Strain Heterogeneity 33.33
5S Count 13
16S Count 19
23S Count 31
tRNA Count 20
Contig Count 270
N50 Contigs 135,326 bp
Longest Contig 273,147 bp
Scaffold Count 270
N50 Scaffolds 135,326 bp
Longest Scaffold 273,147 bp
Genome Size 3,996,382 bp
Protein Count 3,621
Coding Density 83.00%
GC Percentage 28.40%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM126369v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00034910
Country None
Date 2015-7-10
Genbank Assembly Accession GCA_001263695.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,642
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 0
Species Taxid 1496
SSU Count 61
Submitter Rakuno Gakuen University
Taxid 1496
Total Gap Length 0
Translation Table 11
tRNA Count (total) 91
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BBYE00000000.1