Clostridioides difficile
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
NCBI Strain Identifiers KY64
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 16
16S Count 13
23S Count 30
tRNA Count 20
Contig Count 324
N50 Contigs 180,982 bp
Longest Contig 655,350 bp
Scaffold Count 324
N50 Scaffolds 180,982 bp
Longest Scaffold 655,350 bp
Genome Size 4,035,637 bp
Protein Count 3,679
Coding Density 83.14%
GC Percentage 28.40%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM126365v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00034908
Country None
Date 2015-7-10
Genbank Assembly Accession GCA_001263655.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,691
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 0
Species Taxid 1496
SSU Count 60
Submitter Rakuno Gakuen University
Taxid 1496
Total Gap Length 0
Translation Table 11
tRNA Count (total) 92
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BBYC00000000.1