Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio harveyi
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio harveyi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio harveyi
NCBI Strain Identifiers VH2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001591145.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.77%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 12
Contig Count 107
N50 Contigs 75,858 bp
Longest Contig 263,384 bp
Scaffold Count 107
N50 Scaffolds 75,858 bp
Longest Scaffold 263,384 bp
Genome Size 5,685,755 bp
Protein Count 5,118
Coding Density 87.22%
GC Percentage 44.96%
Ambiguous Bases N/A
GTDB representative GCA_001591145.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM126273v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03890867
Country Greece: Crete
Date 2015-8-7
Genbank Assembly Accession GCA_001262735.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source amberjack juveniles
Latitude Longitude None
Molecule Count N/A
CDS Count 5,140
Refseq Category na
Seq Rel Date 2015/08/07
Spanned Gaps 0
Species Taxid 669
SSU Count 1
Submitter University of Copenhagen
Taxid 669
Total Gap Length 0
Translation Table 11
tRNA Count (total) 33
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LGYS00000000.1