Listeria monocytogenes
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes
NCBI Strain Identifiers JF5171
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900187225.1)
Genome Characteristics
CheckM Completeness 99.45%
CheckM Contamination 0.41%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 4
23S Count 3
tRNA Count 20
Contig Count 9
N50 Contigs 1,505,743 bp
Longest Contig 1,505,743 bp
Scaffold Count 1
N50 Scaffolds 2,931,404 bp
Longest Scaffold 2,931,404 bp
Genome Size 2,931,404 bp
Protein Count 2,891
Coding Density 89.45%
GC Percentage 37.91%
Ambiguous Bases 30
GTDB representative GCA_900187225.1
GTDB representative of species False
NCBI Metadata
Assembly Level Chromosome
Assembly Name ASM126239v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03267737
Country Switzerland
Date 2015-8-6
Genbank Assembly Accession GCA_001262395.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source placenta (abortion)
Latitude Longitude None
Molecule Count 1
CDS Count 2,930
Refseq Category na
Seq Rel Date 2015/08/06
Spanned Gaps 8
Species Taxid 1639
SSU Count 4
Submitter University of Bern
Taxid 1639
Total Gap Length 800
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JWLP00000000.1