Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers 20010007_1361421
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.44%
CheckM Contamination 0.26%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 450
N50 Contigs 23,374 bp
Longest Contig 88,245 bp
Scaffold Count 431
N50 Scaffolds 25,264 bp
Longest Scaffold 88,245 bp
Genome Size 4,753,133 bp
Protein Count 4,771
Coding Density 86.27%
GC Percentage 50.55%
Ambiguous Bases 14
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5417_3#5
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA954825
Country United Kingdom
Date 2015-7-26
Genbank Assembly Accession GCA_001261655.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,189
Refseq Category na
Seq Rel Date 2015/07/26
Spanned Gaps 19
Species Taxid 624
SSU Count 2
Submitter SC
Taxid 624
Total Gap Length 620
Translation Table 11
tRNA Count (total) 89
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CXEX00000000.1