Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
NCBI Strain Identifiers A215
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.98%
CheckM Contamination 0.22%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 16
Contig Count 38
N50 Contigs 254,645 bp
Longest Contig 760,816 bp
Scaffold Count 37
N50 Scaffolds 254,645 bp
Longest Scaffold 760,816 bp
Genome Size 3,936,701 bp
Protein Count 3,491
Coding Density 87.58%
GC Percentage 47.59%
Ambiguous Bases 7
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5174_8#4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA889299
Country USA: California
Date 2015-7-25
Genbank Assembly Accession GCA_001259995.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,655
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 1
Species Taxid 666
SSU Count 1
Submitter SC
Taxid 666
Total Gap Length 10
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CWSL00000000.1