Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
NCBI Strain Identifiers 6210
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 16
Contig Count 90
N50 Contigs 92,713 bp
Longest Contig 342,037 bp
Scaffold Count 40
N50 Scaffolds 355,052 bp
Longest Scaffold 593,257 bp
Genome Size 4,035,607 bp
Protein Count 3,577
Coding Density 87.65%
GC Percentage 47.47%
Ambiguous Bases 43
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 4370_2#2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA889396
Country Kenya: Nairobi
Date 2015-07-25
Genbank Assembly Accession GCA_001259475.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,768
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 50
Species Taxid 666
SSU Count 1
Submitter SC
Taxid 666
Total Gap Length 1691
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CWQO00000000.1