Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers Sh259_440930
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.09%
CheckM Contamination 0.49%
CheckM Strain Heterogeneity 20.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 397
N50 Contigs 24,951 bp
Longest Contig 99,494 bp
Scaffold Count 355
N50 Scaffolds 26,739 bp
Longest Scaffold 99,494 bp
Genome Size 4,657,078 bp
Protein Count 4,646
Coding Density 87.40%
GC Percentage 50.84%
Ambiguous Bases 55
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5236_6#2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA954706
Country France
Date 2015-7-25
Genbank Assembly Accession GCA_001258795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 4,945
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 42
Species Taxid 624
SSU Count 1
Submitter SC
Taxid 624
Total Gap Length 5497
Translation Table 11
tRNA Count (total) 85
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CXCY00000000.1