Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers H113100099
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.6%
CheckM Strain Heterogeneity 50.0
5S Count 6
16S Count 2
23S Count 4
tRNA Count 20
Contig Count 574
N50 Contigs 20,016 bp
Longest Contig 80,527 bp
Scaffold Count 555
N50 Scaffolds 20,193 bp
Longest Scaffold 84,898 bp
Genome Size 4,826,601 bp
Protein Count 5,218
Coding Density 86.10%
GC Percentage 50.47%
Ambiguous Bases 22
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 7353_1#23
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1027711
Country United Kingdom
Date 2015-7-26
Genbank Assembly Accession GCA_001258715.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,495
Refseq Category na
Seq Rel Date 2015/07/26
Spanned Gaps 19
Species Taxid 624
SSU Count 4
Submitter SC
Taxid 624
Total Gap Length 1497
Translation Table 11
tRNA Count (total) 85
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CXHA00000000.1