Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers 36401ss_1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 95.39%
CheckM Contamination 0.68%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 663
N50 Contigs 12,852 bp
Longest Contig 58,219 bp
Scaffold Count 388
N50 Scaffolds 24,468 bp
Longest Scaffold 165,279 bp
Genome Size 4,505,514 bp
Protein Count 4,456
Coding Density 82.40%
GC Percentage 50.67%
Ambiguous Bases 5
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name H14072036401
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3345037
Country United Kingdom
Date 2015-07-25
Genbank Assembly Accession GCA_001258235.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,059
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 275
Species Taxid 624
SSU Count 2
Submitter SC
Taxid 624
Total Gap Length 70707
Translation Table 11
tRNA Count (total) 77
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CWTB00000000.1