Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers ShIB3599_440877
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 97.06%
CheckM Contamination 0.36%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 984
N50 Contigs 11,847 bp
Longest Contig 49,335 bp
Scaffold Count 559
N50 Scaffolds 17,276 bp
Longest Scaffold 81,878 bp
Genome Size 4,440,392 bp
Protein Count 4,339
Coding Density 84.14%
GC Percentage 51.04%
Ambiguous Bases 79
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5236_5#1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA954606
Country Pakistan
Date 2015-07-25
Genbank Assembly Accession GCA_001257415.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 4,724
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 425
Species Taxid 624
SSU Count 1
Submitter SC
Taxid 624
Total Gap Length 94517
Translation Table 11
tRNA Count (total) 65
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CXCP00000000.1