Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers Sh273_441040
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 98.64%
CheckM Contamination 0.26%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 411
N50 Contigs 23,090 bp
Longest Contig 76,301 bp
Scaffold Count 383
N50 Scaffolds 23,325 bp
Longest Scaffold 87,925 bp
Genome Size 4,338,751 bp
Protein Count 4,306
Coding Density 87.17%
GC Percentage 50.88%
Ambiguous Bases 33
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5236_7#3
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA954676
Country Nigeria
Date 2015-7-25
Genbank Assembly Accession GCA_001256515.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 4,598
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 28
Species Taxid 624
SSU Count 1
Submitter SC
Taxid 624
Total Gap Length 4169
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CXNR00000000.1