Undefined name (Failed Quality Check)
Isolate MQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers 44401ss_1
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 85.66%
CheckM Contamination 0.57%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 1,434
N50 Contigs 5,978 bp
Longest Contig 46,466 bp
Scaffold Count 515
N50 Scaffolds 19,043 bp
Longest Scaffold 85,673 bp
Genome Size 4,728,545 bp
Protein Count 4,853
Coding Density 75.51%
GC Percentage 50.66%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name H14126044401
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3345044
Country United Kingdom
Date 2015-07-25
Genbank Assembly Accession GCA_001254715.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,686
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 919
Species Taxid 624
SSU Count 2
Submitter SC
Taxid 624
Total Gap Length 231916
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CWUG00000000.1