Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers Sh60108_401056
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 98.21%
CheckM Contamination 0.32%
CheckM Strain Heterogeneity 25.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 383
N50 Contigs 25,222 bp
Longest Contig 88,173 bp
Scaffold Count 353
N50 Scaffolds 25,880 bp
Longest Scaffold 88,173 bp
Genome Size 4,494,602 bp
Protein Count 4,450
Coding Density 86.67%
GC Percentage 50.58%
Ambiguous Bases 36
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5008_7#3
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA954741
Country French Guiana
Date 2015-07-25
Genbank Assembly Accession GCA_001254615.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 4,779
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 30
Species Taxid 624
SSU Count 1
Submitter SC
Taxid 624
Total Gap Length 2260
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CXAS00000000.1