Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers F3183_PFGE 2A
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.31%
CheckM Contamination 0.41%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 380
N50 Contigs 25,566 bp
Longest Contig 100,504 bp
Scaffold Count 374
N50 Scaffolds 25,566 bp
Longest Scaffold 100,504 bp
Genome Size 4,571,974 bp
Protein Count 4,572
Coding Density 87.00%
GC Percentage 50.72%
Ambiguous Bases 37
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6350_1#21
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1027734
Country USA
Date 2015-7-25
Genbank Assembly Accession GCA_001254135.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 4,916
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 6
Species Taxid 624
SSU Count 2
Submitter SC
Taxid 624
Total Gap Length 139
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CXFS00000000.1