Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers 75676
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.31%
CheckM Contamination 0.65%
CheckM Strain Heterogeneity 57.14
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 629
N50 Contigs 16,032 bp
Longest Contig 63,204 bp
Scaffold Count 591
N50 Scaffolds 17,167 bp
Longest Scaffold 63,204 bp
Genome Size 4,660,310 bp
Protein Count 4,806
Coding Density 86.33%
GC Percentage 50.84%
Ambiguous Bases 28
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 8289_7#42
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1970977
Country Israel
Date 2015-7-25
Genbank Assembly Accession GCA_001253815.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,284
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 38
Species Taxid 624
SSU Count 2
Submitter SC
Taxid 624
Total Gap Length 4446
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CXHU00000000.1