Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers 201400063_1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.4%
CheckM Contamination 0.41%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 4
23S Count 2
tRNA Count 20
Contig Count 438
N50 Contigs 25,950 bp
Longest Contig 80,484 bp
Scaffold Count 386
N50 Scaffolds 28,895 bp
Longest Scaffold 110,021 bp
Genome Size 4,811,912 bp
Protein Count 4,866
Coding Density 86.01%
GC Percentage 50.71%
Ambiguous Bases 6
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Sg_201400063_CAGATC_L001
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3345071
Country France
Date 2015-7-26
Genbank Assembly Accession GCA_001253535.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,357
Refseq Category na
Seq Rel Date 2015/07/26
Spanned Gaps 52
Species Taxid 624
SSU Count 4
Submitter SC
Taxid 624
Total Gap Length 12651
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CWVF00000000.1