Undefined name (Failed Quality Check)
Isolate MQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers 44301ss_1
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 89.17%
CheckM Contamination 0.57%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,083
N50 Contigs 7,418 bp
Longest Contig 36,448 bp
Scaffold Count 380
N50 Scaffolds 27,331 bp
Longest Scaffold 112,398 bp
Genome Size 4,721,871 bp
Protein Count 4,789
Coding Density 77.63%
GC Percentage 50.65%
Ambiguous Bases 1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name H14126044301
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3345043
Country United Kingdom
Date 2015-7-25
Genbank Assembly Accession GCA_001253255.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,582
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 703
Species Taxid 624
SSU Count 2
Submitter SC
Taxid 624
Total Gap Length 179298
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CWTL00000000.1