Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers Sh1263_440934
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 98.16%
CheckM Contamination 0.47%
CheckM Strain Heterogeneity 20.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 880
N50 Contigs 16,690 bp
Longest Contig 61,044 bp
Scaffold Count 469
N50 Scaffolds 23,348 bp
Longest Scaffold 83,983 bp
Genome Size 4,565,610 bp
Protein Count 4,443
Coding Density 84.27%
GC Percentage 51.07%
Ambiguous Bases 138
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5236_6#6
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA954711
Country France
Date 2015-7-25
Genbank Assembly Accession GCA_001253095.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 4,803
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 411
Species Taxid 624
SSU Count 1
Submitter SC
Taxid 624
Total Gap Length 116235
Translation Table 11
tRNA Count (total) 67
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CXDF00000000.1