Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
NCBI Strain Identifiers 4111
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.85%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 1
tRNA Count 16
Contig Count 335
N50 Contigs 39,850 bp
Longest Contig 147,886 bp
Scaffold Count 132
N50 Scaffolds 87,666 bp
Longest Scaffold 246,488 bp
Genome Size 3,870,008 bp
Protein Count 3,437
Coding Density 86.86%
GC Percentage 47.79%
Ambiguous Bases 163
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 3002_8#2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA889375
Country Viet Nam
Date 2015-7-25
Genbank Assembly Accession GCA_001252855.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,608
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 203
Species Taxid 666
SSU Count 1
Submitter SC
Taxid 666
Total Gap Length 24067
Translation Table 11
tRNA Count (total) 65
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CWOZ00000000.1