Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers H140820643
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.25%
CheckM Contamination 0.26%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 496
N50 Contigs 24,239 bp
Longest Contig 81,151 bp
Scaffold Count 439
N50 Scaffolds 25,617 bp
Longest Scaffold 81,151 bp
Genome Size 4,911,163 bp
Protein Count 4,943
Coding Density 85.62%
GC Percentage 50.46%
Ambiguous Bases 4
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 12971_8#54
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2445745
Country United Kingdom
Date 2015-07-26
Genbank Assembly Accession GCA_001252455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,554
Refseq Category na
Seq Rel Date 2015/07/26
Spanned Gaps 57
Species Taxid 624
SSU Count 2
Submitter SC
Taxid 624
Total Gap Length 13922
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CWZK00000000.1