Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers Sh1265_440935
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 95.27%
CheckM Contamination 0.31%
CheckM Strain Heterogeneity 25.0
5S Count 2
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 356
N50 Contigs 25,499 bp
Longest Contig 83,883 bp
Scaffold Count 321
N50 Scaffolds 27,176 bp
Longest Scaffold 83,883 bp
Genome Size 4,382,771 bp
Protein Count 4,348
Coding Density 87.57%
GC Percentage 50.87%
Ambiguous Bases 16
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5236_6#7
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA954703
Country France
Date 2015-7-25
Genbank Assembly Accession GCA_001252355.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 4,632
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 35
Species Taxid 624
SSU Count 1
Submitter SC
Taxid 624
Total Gap Length 3990
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CXCV00000000.1