Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 14 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
NCBI Strain Identifiers A61
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 95.9%
CheckM Contamination 0.29%
CheckM Strain Heterogeneity 20.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 14
Contig Count 1,087
N50 Contigs 5,525 bp
Longest Contig 21,421 bp
Scaffold Count 99
N50 Scaffolds 143,404 bp
Longest Scaffold 294,249 bp
Genome Size 3,966,297 bp
Protein Count 3,600
Coding Density 83.72%
GC Percentage 47.59%
Ambiguous Bases 100
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 4056_5#3
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA889386
Country India
Date 2015-07-25
Genbank Assembly Accession GCA_001250935.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,701
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 988
Species Taxid 666
SSU Count 1
Submitter SC
Taxid 666
Total Gap Length 54550
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CWOS00000000.1