Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers sh02-8933
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.13%
CheckM Contamination 0.57%
CheckM Strain Heterogeneity 33.33
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 398
N50 Contigs 24,929 bp
Longest Contig 80,422 bp
Scaffold Count 381
N50 Scaffolds 25,262 bp
Longest Scaffold 80,422 bp
Genome Size 4,646,761 bp
Protein Count 4,667
Coding Density 86.77%
GC Percentage 50.76%
Ambiguous Bases 51
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6350_1#2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1027679
Country France
Date 2015-07-25
Genbank Assembly Accession GCA_001250515.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,213
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 17
Species Taxid 624
SSU Count 2
Submitter SC
Taxid 624
Total Gap Length 592
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CXFQ00000000.1