Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
NCBI Strain Identifiers 4642
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.86%
CheckM Contamination 0.07%
CheckM Strain Heterogeneity 50.0
5S Count 3
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 323
N50 Contigs 32,604 bp
Longest Contig 91,797 bp
Scaffold Count 156
N50 Scaffolds 90,385 bp
Longest Scaffold 225,676 bp
Genome Size 3,996,103 bp
Protein Count 3,571
Coding Density 87.03%
GC Percentage 47.68%
Ambiguous Bases 252
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 3002_8#4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA889369
Country India
Date 2015-07-25
Genbank Assembly Accession GCA_001250435.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,749
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 167
Species Taxid 666
SSU Count 1
Submitter SC
Taxid 666
Total Gap Length 15043
Translation Table 11
tRNA Count (total) 61
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CWPE00000000.1