Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers Sh1166_440936
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.38%
CheckM Contamination 0.26%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 393
N50 Contigs 27,179 bp
Longest Contig 88,146 bp
Scaffold Count 331
N50 Scaffolds 29,636 bp
Longest Scaffold 88,146 bp
Genome Size 4,422,392 bp
Protein Count 4,311
Coding Density 87.35%
GC Percentage 50.95%
Ambiguous Bases 60
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5236_6#8
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA954704
Country France
Date 2015-7-25
Genbank Assembly Accession GCA_001249915.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 4,623
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 62
Species Taxid 624
SSU Count 1
Submitter SC
Taxid 624
Total Gap Length 7903
Translation Table 11
tRNA Count (total) 86
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CXCZ00000000.1