Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers ShIB1_401077
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.44%
CheckM Contamination 0.41%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 393
N50 Contigs 25,210 bp
Longest Contig 88,157 bp
Scaffold Count 377
N50 Scaffolds 26,995 bp
Longest Scaffold 88,157 bp
Genome Size 4,587,937 bp
Protein Count 4,568
Coding Density 87.13%
GC Percentage 50.86%
Ambiguous Bases 36
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5008_8#1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA954691
Country South Korea
Date 2015-07-25
Genbank Assembly Accession GCA_001248805.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 4,892
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 16
Species Taxid 624
SSU Count 1
Submitter SC
Taxid 624
Total Gap Length 391
Translation Table 11
tRNA Count (total) 77
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CXAX00000000.1