Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers 20040880_1361372
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.44%
CheckM Contamination 0.57%
CheckM Strain Heterogeneity 25.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 486
N50 Contigs 18,620 bp
Longest Contig 88,245 bp
Scaffold Count 451
N50 Scaffolds 20,843 bp
Longest Scaffold 88,245 bp
Genome Size 4,474,980 bp
Protein Count 4,420
Coding Density 86.84%
GC Percentage 50.86%
Ambiguous Bases 40
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5417_1#6
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA954630
Country Sri Lanka
Date 2015-7-25
Genbank Assembly Accession GCA_001248485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 4,751
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 35
Species Taxid 624
SSU Count 3
Submitter SC
Taxid 624
Total Gap Length 3853
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CXEF00000000.1