Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers 26101A_1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 91.1%
CheckM Contamination 0.52%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 790
N50 Contigs 9,528 bp
Longest Contig 43,868 bp
Scaffold Count 363
N50 Scaffolds 25,569 bp
Longest Scaffold 88,517 bp
Genome Size 4,441,104 bp
Protein Count 4,401
Coding Density 80.37%
GC Percentage 50.75%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name H14056026101
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3345106
Country United Kingdom
Date 2015-07-25
Genbank Assembly Accession GCA_001248295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,090
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 427
Species Taxid 624
SSU Count 2
Submitter SC
Taxid 624
Total Gap Length 108279
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CWSX00000000.1