Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
NCBI Strain Identifiers UM408
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900478295.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 26
N50 Contigs 111,980 bp
Longest Contig 265,219 bp
Scaffold Count 26
N50 Scaffolds 111,980 bp
Longest Scaffold 265,219 bp
Genome Size 1,576,466 bp
Protein Count 1,500
Coding Density 91.21%
GC Percentage 39.09%
Ambiguous Bases 182
GTDB representative GCA_900478295.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM124810v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03777286
Country Malaysia
Date 2015-8-5
Genbank Assembly Accession GCA_001248105.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Gastric Biopsy
Latitude Longitude None
Molecule Count N/A
CDS Count 1,534
Refseq Category na
Seq Rel Date 2015/08/05
Spanned Gaps 0
Species Taxid 210
SSU Count 2
Submitter University of Malaya-University of Western Australia
Taxid 210
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LFIU00000000.1