Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
NCBI Strain Identifiers UM152
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900478295.1)
Genome Characteristics
CheckM Completeness 99.36%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 16
N50 Contigs 188,275 bp
Longest Contig 434,701 bp
Scaffold Count 16
N50 Scaffolds 188,275 bp
Longest Scaffold 434,701 bp
Genome Size 1,633,599 bp
Protein Count 1,545
Coding Density 91.21%
GC Percentage 39.02%
Ambiguous Bases 264
GTDB representative GCA_900478295.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM124801v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03776086
Country Malaysia
Date 2015-8-5
Genbank Assembly Accession GCA_001248015.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Gastric Biopsy
Latitude Longitude None
Molecule Count N/A
CDS Count 1,581
Refseq Category na
Seq Rel Date 2015/08/05
Spanned Gaps 0
Species Taxid 210
SSU Count 2
Submitter University of Malaya-University of Western Australia
Taxid 210
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LFIS00000000.1