Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella sonnei
NCBI Strain Identifiers 124561
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.44%
CheckM Contamination 0.31%
CheckM Strain Heterogeneity 25.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 445
N50 Contigs 23,321 bp
Longest Contig 80,488 bp
Scaffold Count 441
N50 Scaffolds 23,321 bp
Longest Scaffold 80,488 bp
Genome Size 4,670,072 bp
Protein Count 4,712
Coding Density 86.57%
GC Percentage 50.71%
Ambiguous Bases 5
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 8290_4#91
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2164637
Country Israel
Date 2015-7-25
Genbank Assembly Accession GCA_001245885.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,221
Refseq Category na
Seq Rel Date 2015/07/25
Spanned Gaps 4
Species Taxid 624
SSU Count 2
Submitter SC
Taxid 624
Total Gap Length 765
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CXLF00000000.1