Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhi
NCBI Strain Identifiers ty1-34
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.92%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 80
N50 Contigs 118,958 bp
Longest Contig 466,376 bp
Scaffold Count 52
N50 Scaffolds 185,441 bp
Longest Scaffold 466,376 bp
Genome Size 4,716,374 bp
Protein Count 4,570
Coding Density 86.80%
GC Percentage 52.08%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 10425_1#94
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2152267
Country Viet Nam
Date 2015-7-21
Genbank Assembly Accession GCA_001240105.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,808
Refseq Category na
Seq Rel Date 2015/07/21
Spanned Gaps 28
Species Taxid 28901
SSU Count 2
Submitter SC
Taxid 90370
Total Gap Length 7860
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CUYK00000000.1