Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium; x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104
NCBI Strain Identifiers H14
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 151
N50 Contigs 88,529 bp
Longest Contig 324,037 bp
Scaffold Count 115
N50 Scaffolds 172,203 bp
Longest Scaffold 497,335 bp
Genome Size 4,946,188 bp
Protein Count 4,756
Coding Density 87.65%
GC Percentage 52.10%
Ambiguous Bases 69
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5275_7#1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA773624
Country United Kingdom:Scotland
Date 2015-7-21
Genbank Assembly Accession GCA_001223305.1
Genome Category Isolate
Genome Representation full
Isolate H14
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 5,050
Refseq Category na
Seq Rel Date 2015/07/21
Spanned Gaps 36
Species Taxid 28901
SSU Count 1
Submitter SC
Taxid 85569
Total Gap Length 2271
Translation Table 11
tRNA Count (total) 65
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CTGT00000000.1