Salmonella enterica
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium; x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104
NCBI Strain Identifiers V27
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.9%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 213
N50 Contigs 57,136 bp
Longest Contig 154,933 bp
Scaffold Count 128
N50 Scaffolds 149,808 bp
Longest Scaffold 455,109 bp
Genome Size 4,959,824 bp
Protein Count 4,776
Coding Density 87.42%
GC Percentage 52.11%
Ambiguous Bases 28
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5299_3#7
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA773553
Country United Kingdom:Scotland
Date 2015-7-21
Genbank Assembly Accession GCA_001222645.1
Genome Category Isolate
Genome Representation full
Isolate V27
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 5,091
Refseq Category na
Seq Rel Date 2015/07/21
Spanned Gaps 85
Species Taxid 28901
SSU Count 1
Submitter SC
Taxid 85569
Total Gap Length 4329
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CTQG00000000.1