Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium; x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104
NCBI Strain Identifiers H138
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.78%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 97
N50 Contigs 149,792 bp
Longest Contig 461,919 bp
Scaffold Count 76
N50 Scaffolds 225,759 bp
Longest Scaffold 682,056 bp
Genome Size 4,966,446 bp
Protein Count 4,744
Coding Density 87.35%
GC Percentage 52.10%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 8080_3#43
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1521984
Country United Kingdom:Scotland
Date 2015-7-21
Genbank Assembly Accession GCA_001220905.1
Genome Category Isolate
Genome Representation full
Isolate H138
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 5,063
Refseq Category na
Seq Rel Date 2015/07/21
Spanned Gaps 21
Species Taxid 28901
SSU Count 4
Submitter SC
Taxid 85569
Total Gap Length 5692
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CTIL00000000.1