Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium; x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104
NCBI Strain Identifiers H71
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 105
N50 Contigs 129,536 bp
Longest Contig 317,404 bp
Scaffold Count 96
N50 Scaffolds 172,208 bp
Longest Scaffold 496,771 bp
Genome Size 4,942,475 bp
Protein Count 4,733
Coding Density 87.64%
GC Percentage 52.09%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5295_2#1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA773526
Country United Kingdom:Scotland
Date 2015-7-21
Genbank Assembly Accession GCA_001220525.1
Genome Category Isolate
Genome Representation full
Isolate H71
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 5,046
Refseq Category na
Seq Rel Date 2015/07/21
Spanned Gaps 9
Species Taxid 28901
SSU Count 1
Submitter SC
Taxid 85569
Total Gap Length 868
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CTON00000000.1