Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium; x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104
NCBI Strain Identifiers V98
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 90
N50 Contigs 196,577 bp
Longest Contig 682,117 bp
Scaffold Count 88
N50 Scaffolds 223,033 bp
Longest Scaffold 682,117 bp
Genome Size 4,976,938 bp
Protein Count 4,760
Coding Density 87.55%
GC Percentage 52.12%
Ambiguous Bases 2
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 8080_3#78
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1521985
Country United Kingdom:Scotland
Date 2015-7-21
Genbank Assembly Accession GCA_001220325.1
Genome Category Isolate
Genome Representation full
Isolate V98
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 5,073
Refseq Category na
Seq Rel Date 2015/07/21
Spanned Gaps 2
Species Taxid 28901
SSU Count 6
Submitter SC
Taxid 85569
Total Gap Length 22
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CTHR00000000.1