Yersinia enterocolitica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Yersinia; s__Yersinia enterocolitica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia enterocolitica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia enterocolitica
NCBI Strain Identifiers 02;YE04/02;YE04
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_901472495.1)
Genome Characteristics
CheckM Completeness 99.95%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 38
N50 Contigs 369,212 bp
Longest Contig 571,317 bp
Scaffold Count 35
N50 Scaffolds 544,591 bp
Longest Scaffold 711,324 bp
Genome Size 4,692,280 bp
Protein Count 4,220
Coding Density 86.81%
GC Percentage 47.04%
Ambiguous Bases 3
GTDB representative GCA_901472495.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5116_2#4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA980182
Country United Kingdom
Date 2015-7-21
Genbank Assembly Accession GCA_001219605.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,270
Refseq Category na
Seq Rel Date 2015/07/21
Spanned Gaps 3
Species Taxid 630
SSU Count 1
Submitter SC
Taxid 630
Total Gap Length 55
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CTKX00000000.1