Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium; x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104
NCBI Strain Identifiers H136
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 4
tRNA Count 20
Contig Count 82
N50 Contigs 205,042 bp
Longest Contig 682,263 bp
Scaffold Count 80
N50 Scaffolds 224,495 bp
Longest Scaffold 682,263 bp
Genome Size 4,979,822 bp
Protein Count 4,767
Coding Density 87.57%
GC Percentage 52.12%
Ambiguous Bases 5
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 8080_3#41
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1521962
Country United Kingdom:Scotland
Date 2015-7-21
Genbank Assembly Accession GCA_001218425.1
Genome Category Isolate
Genome Representation full
Isolate H136
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 5,075
Refseq Category na
Seq Rel Date 2015/07/21
Spanned Gaps 2
Species Taxid 28901
SSU Count 5
Submitter SC
Taxid 85569
Total Gap Length 51
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CTPZ00000000.1