Salmonella enterica
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium; x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104
NCBI Strain Identifiers H30
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.98%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 2
23S Count 1
tRNA Count 18
Contig Count 145
N50 Contigs 81,157 bp
Longest Contig 311,361 bp
Scaffold Count 97
N50 Scaffolds 205,084 bp
Longest Scaffold 377,295 bp
Genome Size 4,956,501 bp
Protein Count 4,764
Coding Density 87.60%
GC Percentage 52.10%
Ambiguous Bases 7
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5388_1#5
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA773520
Country United Kingdom:Scotland
Date 2015-7-21
Genbank Assembly Accession GCA_001218325.1
Genome Category Isolate
Genome Representation full
Isolate H30
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 5,065
Refseq Category na
Seq Rel Date 2015/07/21
Spanned Gaps 48
Species Taxid 28901
SSU Count 1
Submitter SC
Taxid 85569
Total Gap Length 2812
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CTHN00000000.1