Mycobacterium abscessus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium abscessus
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacteroides; s__Mycobacteroides abscessus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacteroides; s__Mycobacteroides abscessus
NCBI Strain Identifiers PAP119;19_q
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000069185.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 41
N50 Contigs 274,386 bp
Longest Contig 672,661 bp
Scaffold Count 32
N50 Scaffolds 284,853 bp
Longest Scaffold 714,799 bp
Genome Size 5,163,376 bp
Protein Count 5,179
Coding Density 92.22%
GC Percentage 64.13%
Ambiguous Bases 2
GTDB representative GCA_000069185.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 7396_8#71
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1464928
Country United Kingdom: Papworth
Date 2015-07-20
Genbank Assembly Accession GCA_001214825.1
Genome Category Isolate
Genome Representation full
Isolate 19_q
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 5,204
Refseq Category na
Seq Rel Date 2015/07/20
Spanned Gaps 9
Species Taxid 36809
SSU Count 1
Submitter SC
Taxid 36809
Total Gap Length 172
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CSXY00000000.1