Mycobacterium abscessus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium abscessus
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacteroides; s__Mycobacteroides abscessus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacteroides; s__Mycobacteroides abscessus
NCBI Strain Identifiers 2_ab;PAP093
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000069185.1)
Genome Characteristics
CheckM Completeness 99.83%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 357
N50 Contigs 372,425 bp
Longest Contig 596,934 bp
Scaffold Count 186
N50 Scaffolds 608,711 bp
Longest Scaffold 917,822 bp
Genome Size 5,334,433 bp
Protein Count 5,424
Coding Density 90.32%
GC Percentage 64.00%
Ambiguous Bases 33
GTDB representative GCA_000069185.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 7396_7#45
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1464967
Country United Kingdom: Papworth
Date 2015-07-21
Genbank Assembly Accession GCA_001214405.1
Genome Category Isolate
Genome Representation full
Isolate 2_ab
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 5,421
Refseq Category na
Seq Rel Date 2015/07/21
Spanned Gaps 171
Species Taxid 36809
SSU Count 1
Submitter SC
Taxid 36809
Total Gap Length 62608
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CSWW00000000.1