Chlamydia trachomatis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Verrucomicrobiota_A; c__Chlamydiia; o__Chlamydiales; f__Chlamydiaceae; g__Chlamydia; s__Chlamydia trachomatis
Filtered NCBI Taxonomy d__Bacteria; p__Chlamydiae; c__Chlamydiia; o__Chlamydiales; f__Chlamydiaceae; g__Chlamydia; s__Chlamydia trachomatis
Unfiltered NCBI Taxonomy d__Bacteria; x__PVC group; p__Chlamydiae; c__Chlamydiia; o__Chlamydiales; f__Chlamydiaceae; x__Chlamydia/Chlamydophila group; g__Chlamydia; s__Chlamydia trachomatis
NCBI Strain Identifiers Swab5
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000012125.1)
Genome Characteristics
CheckM Completeness 98.92%
CheckM Contamination 0.9%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 82
N50 Contigs 431,969 bp
Longest Contig 525,613 bp
Scaffold Count 37
N50 Scaffolds 958,482 bp
Longest Scaffold 958,482 bp
Genome Size 1,116,825 bp
Protein Count 969
Coding Density 87.48%
GC Percentage 41.28%
Ambiguous Bases 10
GTDB representative GCA_000012125.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5082_8#4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA901487
Country United Kingdom: Cambridge
Date 2015-7-22
Genbank Assembly Accession GCA_001213525.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source vaginal
Latitude Longitude None
Molecule Count N/A
CDS Count 988
Refseq Category na
Seq Rel Date 2015/07/22
Spanned Gaps 45
Species Taxid 813
SSU Count 1
Submitter SC
Taxid 813
Total Gap Length 19470
Translation Table 11
tRNA Count (total) 37
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CSTK00000000.1