Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers B156;B3197
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 96.4%
CheckM Contamination 0.4%
CheckM Strain Heterogeneity 25.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 887
N50 Contigs 7,570 bp
Longest Contig 51,702 bp
Scaffold Count 719
N50 Scaffolds 8,821 bp
Longest Scaffold 51,702 bp
Genome Size 3,767,353 bp
Protein Count 4,051
Coding Density 88.52%
GC Percentage 67.71%
Ambiguous Bases 16
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5463_5#11
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1931868
Country Kenya
Date 2015-7-20
Genbank Assembly Accession GCA_001208185.1
Genome Category Isolate
Genome Representation full
Isolate B3197
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,904
Refseq Category na
Seq Rel Date 2015/07/20
Spanned Gaps 168
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 20856
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CSOT00000000.1