Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers G00101715
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 95.73%
CheckM Contamination 1.23%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 865
N50 Contigs 9,579 bp
Longest Contig 37,343 bp
Scaffold Count 614
N50 Scaffolds 12,382 bp
Longest Scaffold 39,169 bp
Genome Size 4,250,236 bp
Protein Count 4,567
Coding Density 88.45%
GC Percentage 65.18%
Ambiguous Bases 376
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6505_1#10
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA968184
Country Netherlands: Amsterdam
Date 2015-7-20
Genbank Assembly Accession GCA_001208165.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,591
Refseq Category na
Seq Rel Date 2015/07/20
Spanned Gaps 251
Species Taxid 1773
SSU Count 1
Submitter SC
Taxid 1773
Total Gap Length 26045
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CRZW00000000.1