Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers 02002;B114
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 322
N50 Contigs 18,327 bp
Longest Contig 67,950 bp
Scaffold Count 289
N50 Scaffolds 20,093 bp
Longest Scaffold 74,331 bp
Genome Size 3,815,631 bp
Protein Count 3,680
Coding Density 90.10%
GC Percentage 67.94%
Ambiguous Bases 2
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5515_5#12
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751497
Country Italy
Date 2015-7-20
Genbank Assembly Accession GCA_001207695.1
Genome Category Isolate
Genome Representation full
Isolate 02002
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,630
Refseq Category na
Seq Rel Date 2015/07/20
Spanned Gaps 33
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 1945
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CSPU00000000.1